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| E72 575 BME |
Molecular Basis Of Bioelectrical Excitation |
Cui |
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Ion channels are the molecular basis of membrane excitability in all cell types, including neuronal, heart, and muscle cells. This course presents the structure and the mechanism of function of ion channels at the molecular level. It introduces the basic principles and methods in the ion channel study as well as the structure-function relation of various types of channels. Exemplary channels that have been best studied will be discussed to illustrate the current understanding. |
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| E72 574 BME |
Quantitative Bioelectricity And Cardiac Excitation |
Rudy |
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The goal of this course is to provide working knowledge of theoretical methods that are used in the fields of Electrophysiology and Bioelectricity. The methods will be applied to describe, from a theoretical and quantitative perspective, the electrical behavior of excitable tissues, with emphasis on the heart. Topics to be covered include: Action potential generation, action potential propagation, source-field relationships in homogeneous and inhomogeneous media, models of cardiac excitation and arrhythmia, quantitative electrocardiography. Discussion sessions will covers key papers in the fields of cardiac electrophysiology, cardiac arrhythmia, electrocardiography and electrocardiographic imaging. |
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| E72 503A BME |
Cell And Organ Systems Biology |
Wilkinson |
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This course integrates and extends the basic principles of cell biology and physiology to the functions of the major organ systems of the body i.e. muscle, cardiovascular, renal, respiratory, gastrointestinal and endocrine. |
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| E62 5068 BME |
Fundamentals Of Molecular Cell Biology |
Cooper |
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This is a core course for incoming graduate students in Cell and Molecular Biology programs to learn about research and experimental strategies used to dissect molecular mechanisms that underlie cell structure and function, including techniques of protein biochemistry. |
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| E62 5329 BME |
Mathematical Methods For Biophysics And Biochemistry |
Baker |
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The purpose of this course is to introduce the basic concepts of mathematical physics to students in the context of problems they are likely to encounter in their coursework and research. Specifically, the course will introduce analytical and numerical mathematical methods relevant to the fields of biophysics and biochemistry. By the end of the course, the students should have a good grasp of these basic techniques, their application to biological problems, and related software and computational resources. |
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| E62 537 BME |
Computational Molecular Biology |
Brent |
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This course focuses on genome sequence analysis, emphasizing computational and algorithmic issues. Topics covered include: the essential biology, the essential probability theory, base calling and quality clipping, predicting protein-coding genes (including Hidden Markov Models and comparative genomics approaches), sequence aligning, RNA folding, protein domain analysis, and an introduction to population biology. This includes both paper and pencil homework assignments and programming labs in "C." |
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| E62 5610 BME |
Principles Of Protein Structure |
Pappu |
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The goal of the course is to provide a foundation for understanding the molecular determinants of protein structure, sequence-structure relationships, protein evolution, and protein design. The course will be divided into three modules namely 1) Quantitative understanding of protein structures and sequence-structure relationships; 2) Protein Stability; and 3)Protein folding and design. |
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| E62 568 BME |
Cardiovascular Dynamics |
Taber |
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This course focuses on the analysis of blood flow through the heart and blood vessels. Basic cardiovascular anatomy and physiology; principles of continuum mechanics. Flow through heart chambers, valves, and coronary arteries; peristaltic flow in the embryonic heart. Steady and unsteady flow in tubes; wave propagation in blood vessels; flow in collapsible tubes (veins); microcirculation. |
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| E62 530 BME |
Modeling Biomolecular Systems I |
Ponder |
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This course covers the applications of computer modeling and simulation to problems involving biological macromolecules. Lectures will discuss the theory and algorithms underlying a variety of simulation techniques. Laboratory exercises and a student project will provide experience with software presently used in the field. Topics examined in detail include: computational tools, molecular visualization, simulation methodology, force field methods, optimization, experimental design, QSAR, scoring and screening of ligands, docking, structure databases, and refinement and prediction of structures. |
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| E62 5620 BME |
Protein Function And Interactions |
Sept |
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This course focuses on the interactions between proteins, nucleic acids, small molecules, and drugs. We begin with the elements of molecular recognition, binding and prediction of interactions. We next move on to molecular kinetics, inhibition and allosteric regulation. Finally we look at modeling regulatory networks and signaling pathways using systems biology approaches. |
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| E72 506 BME |
Seminar In Imaging Science And Engineering |
O'Sullivan |
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This seminar course consists of a series of tutorial lectures on Imaging Science and Engineering with emphasis on applications of imaging technology. Students are exposed to a variety of imaging applications that vary depending on the semester, but may include multispectral remote sensing, astronomical imaging, microscopic imaging, ultrasound imaging, and tomographic imaging. Guest lecturers come from several parts of the university. |
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| E62 502 BME |
Cardiovascular Mri--physics To Clinical Application |
Caruthers and Wickline |
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This graduate course (seniors welcome) will cover the basic physics involved in creating an image by magnetic resonance technology. The use of this technology, specifically as it applies to the unique challenges of cardiovascular applications, will be examined. This will include topics such as motion compensation techniques, real-time imaging, exogenous contrast enhancement, and quantitative flow measurements, for example. As much as one-third of the class will involve actual case studies and the discussion of clinical use for cardiovascular MRI. |
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| E72 591 BME |
Biomedical Optics I: Principles |
Wang |
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This course covers the principles of optical photon transport in biological tissue. Topics include a brief introduction to biomedical optics, single-scatterer theories, Monte Carlo modeling of photon transport, convolution for broad-beam responses, radiative transfer equation and diffusion theory, hybrid Monte Carlo method and diffusion theory, and sensing of optical properties and spectroscopy. |
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| E72 592 BME |
Biomedical Optics II: Imaging |
Wang |
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This course covers optical imaging technologies. Topics include ballistic imaging, optical coherence tomography, Mueller optical coherence tomography, diffuse optical tomography, photoacoustic tomography, and ultrasound-modulated optical tomography. |
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| E72 5911 BME |
Cardiovascular Biophysics Journal Club |
Kovac |
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This journal club is intended for beginning graduate students, advanced undergraduates, and MSTP students with a background in the quantitative sciences (engineering, physics, math, chemistry, etc). The subjects covered are inherently multidisciplinary. We will review landmark and recent publications in quantitative cardiovascular physiology, mathematical modeling of physiologic systems and related topics such as chaos theory and nonlinear dynamics of biological systems. Familiarity with calculus, differential equations, and basic engineering/thermodynamic principles is assumed. |
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